Publications
NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.
2017
Abstract
No abstract has been registered
Authors
Gordon J. McDougall J. William Allwood Gema Pereira-Caro Emma M. Brown Susan Verrall Derek Stewart Cheryl Latimer Geoff McMullan Roger Lawther Gloria O'Connor Ian Rowland Alan Crozier Chris I. R. GillAbstract
Scope: Ileostomy studies provide a unique insight into digestion of food, allowing identifica- tion of physiologically relevant dietary phytochemicals and their metabolites important to gut health. We previously reported the consistent increase of components in ileal fluids of ileosto- mates after consumption of raspberries with use of nontargeted LC–MS n techniques and data deconvolution software highlighting two major unknown components (m/z 355 and 679). Methods and results: In-depth LC–MS n analyses suggested that the ileal m/z 355 components were p-coumaroyl glucarates. These compounds have not been identified previously and were confirmed in raspberry extracts after partial purification. The major ileal component with m/z 679 was a glycoside with an aglycone of m/z 517 and was present as two peaks in extracts of whole puree, unseeded puree, and isolated seeds. These components were purified using Sephadex LH20 and C18 SPE units and identified as major, novel raspberry triterpenoid glycosides. This triterpenoid-enriched fraction (100 nM) protected against H 2 O 2 -induced DNA damage in both colon cancer and normal cell lines and altered expression of cytoprotective genes. Conclusion: The presence of these novel raspberry triterpenoid components in ileal fluids indi- cates that they would be colon-available in vivo, so confirmation of their anticancer bioactivities is of key physiological relevance.
Abstract
Anthropogenic atmospheric emissions of CO2 are responsible for simultaneous ocean warming (OW) and ocean acidification (OA). These global events can have important impacts on marine fleshy macroalgae and coastal ecosystems. To understand the effects of OW and OA on the early life history stages of native (Macrocystis pyrifera) and invasive (Undaria pinnatifida) macroalgae, a multi-factorial experiment was performed to determine the independent and interactive effects of the drivers and the corresponding species-specific responses. Meiospores of M. pyrifera and U. pinnatifida were separately exposed to a 4 × 2 factorial design of seawater pH (pHT 7.20, extreme OA predicted for 2300; pHT 7.65, OA predicted for 2100; pHT 8.03, ambient pH; and pHT 8.40, pre-industrial pH) and temperature (12 °C, seasonal average temperature; and 16 °C, OW predicted for 2100). Over 15 days, different physiological parameters (i.e. meiospore germination, germling growth rate, gametophyte development and sex ratio) were measured. Reduced seawater pH and elevated temperature had independent and significant effects on developmental processes (germling growth rate, and male and female gametophyte sizes were independently greater under OA and OW conditions), but the interaction of the abiotic factors had no effect on any stage of meiospore development of either species. Despite some small differences between species (e.g. sex ratio), results of this experiment suggest that microscopic stages of the native M. pyrifera and the invasive U. pinnatifida will respond similarly to OA and OW.
Authors
Florencia A. Yannelli Christiane Koch Jonathan M. Jeschke Johannes KollmannAbstract
Several hypotheses have been proposed to explain biotic resistance of a recipient plant community based on reduced niche opportunities for invasive alien plant species. The limiting similarity hypothesis predicts that invasive species are less likely to establish in communities of species holding similar functional traits. Likewise, Darwin’s naturalization hypothesis states that invasive species closely related to the native community would be less successful. We tested both using the invasive alien Ambrosia artemisiifolia L. and Solidago gigantea Aiton, and grassland species used for ecological restoration in central Europe. We classified all plant species into groups based on functional traits obtained from trait databases and calculated the phylogenetic distance among them. In a greenhouse experiment, we submitted the two invasive species at two propagule pressures to competition with communities of ten native species from the same functional group. In another experiment, they were submitted to pairwise competition with native species selected from each functional group. At the community level, highest suppression for both invasive species was observed at low propagule pressure and not explained by similarity in functional traits. Moreover, suppression decreased asymptotically with increasing phylogenetic distance to species of the native community. When submitted to pairwise competition, suppression for both invasive species was also better explained by phylogenetic distance. Overall, our results support Darwin’s naturalization hypothesis but not the limiting similarity hypothesis based on the selected traits. Biotic resistance of native communities against invasive species at an early stage of establishment is enhanced by competitive traits and phylogenetic relatedness.
Authors
Gary Dobson Gordon J. McDougall Derek Stewart Miguel Ángel Cubero Reijo O. KarjalainenAbstract
The effects of juice matrix and pasteurization on the stability of total phenols and especially total and indi- vidual anthocyanins were examined in black currant (BC) juice and mixtures with apple, persimmon, and peach juices at 4 °Cand20°C. Total phenol content decreased in all juices at both temperatures but there was a trend to lower levels in unpasteurized over pasteurized juices. Differences in the decline of total anthocyanins between pasteurized and unpasteurized juices varied according to the juice type and the storage temperature. At 4 °C storage, anthocyanins declined in all juices according to pseudo 1st-order kinetics and there were only small differences in the rates between pasteurized and unpasteurized juices. However, at 20 °C, although pasteurized and unpasteurized BC juices and pasteur- ized mixed juices followed pseudo 1st-order kinetics, there was a different pattern in unpasteurized mixed juices; a rapid initial decline was followed by a slowing down. The effect of the added juice on anthocyanin decline was also different at either temperature. At 4 °C, the anthocyanins decreased faster in mixed juices than BC juice alone, but at 20 °C, at least in pasteurized mixed juices, the decline was similar or even slower than in BC juice; there were only small differences among the 3 mixed juices. At 20 °C, in pasteurized and unpasteurized BC juices, the rate of decrease was essentially the same for all 4 individual anthocyanins but in the mixed juices the 2 glucosides decreased significantly faster than the 2 rutinosides.
Authors
Gisela Lüscher Thomas Nemecek Michaela Arndorfer Katalin Balázs Peter Dennis Wendy Fjellstad Jürgen Kurt Friedel Gérard Gaillard Felix Herzog Jean-Pierre Sarthou Siyka Stoyanova Sebastian Wolfrum Philippe JeanneretAbstract
Purpose Inclusion of biodiversity as an indicator in the land use impact pathway of Life Cycle Assessment (LCA) is essential to assess the effects of human activities on the environment. Numerous models have been applied, but validations that use actual data, collected in the field, are scarce. Methods The expert system SALCA-BD (Swiss Agricultural LCA—Biodiversity), assigns coefficients for land use class suitability and impact of agricultural practices on species diversity at field and farm scale. We used data on land use classes and agricultural practices from 132 farms located in eight European regions to complete the life cycle inventory. SALCA-BD species diversity scores were calculated for individual fields, aggregated to the farm scale, and compared to field records of arable crop flora, grassland flora, spiders, and wild bees. Results and discussion Overall, species diversity scores from SALCA-BD were positively related to the observed species richness from field survey data. The extent of the relationship diminished from arable crop flora and grassland flora to spiders and to wild bees, and from field to farm scale. Conclusions Validation of a LCA biodiversity assessment tool with data from field surveys revealed the benefit of considering multiple aspects of biodiversity. The appropriate scale for species diversity assessment (as a proxy for biodiversity) is the respective species habitat. Extension of scale increases uncertainty, which should be addressed by developing characterization factors for as detailed a land use classification as possible.
Authors
Isabella Børja Douglas L. Godbold Jan Světlík Nina Elisabeth Nagy Roman Gebauer Josef Urban Daniel Volařík Holger Lange Paal Krokene Petr Čermák Toril Drabløs EldhusetAbstract
Global warming will most likely lead to increased drought stress in forest trees. We wanted to describe the adaptive responses of fine roots and fungal hyphae, at different soil depths, in a Norway spruce stand to long-term drought stress induced by precipitation exclusion over two growing seasons. We used soil cores, minirhizotrons and nylon meshes to estimate growth, biomass and distribution of fine roots and fungal hyphae at different soil depths. In control plots fine roots proliferated in upper soil layers, whereas in drought plots there was no fine root growth in upper soil layers and roots mostly occupied deeper soil layers. Fungal hyphae followed the same pattern as fine roots, with the highest biomass in deeper soil layers in drought plots. We conclude that both fine roots and fungal hyphae respond to long-term drought stress by growing into deeper soil layers.
Authors
G. Gilioli G. Schrader J.-C. Gregoire A. MacLeod O. Mosbach-Schulz Trond Rafoss V. Rossi G. Urek W. van der WerfAbstract
A new method for pest risk assessment and the identification and evaluation of risk-reducing options is currently under development by the European Food Safety Authority (EFSA) Plant Health Panel. The draft method has been tested on pests of concern to the European Union (EU). The method is adaptable and can focus either on all the steps and sub-steps of the assessment process or on specific parts if necessary. It is based on assessing changes in pest population abundance as the major driver of the impact on cultivated plants and on the environment. Like other pest risk assessment systems the method asks questions about the likelihood and magnitude of factors that contribute to risk. Responses can be based on data or expert judgment. Crucially, the approach is quantitative, and it captures uncertainty through the provision by risk assessors of quantile estimates of the probability distributions for the assessed variables and parameters. The assessment is based on comparisons between different scenarios, and the method integrates risk-reducing options where they apply to a scenario, for example current regulation against a scenario where risk-reducing options are not applied. A strategy has been developed to communicate the results of the risk assessment in a clear, comparable and transparent way, with the aim of providing the requestor of the risk assessment with a useful answer to the question(s) posed to the EFSA Plant Health Panel. The method has been applied to four case studies, two fungi, Ceratocystis platani and Cryphonectria parasitica, the nematode Ditylenchus destructor and the Grapevine flavescence dorée phytoplasma. Selected results from these case studies illustrate the types of output that the method can deliver.
Abstract
In fungi, distribution of secondary metabolite (SM) gene clusters is often associated with host- or environment-specific benefits provided by SMs. In the plant pathogen Alternaria brassicicola (Dothideomycetes), the DEP cluster confers an ability to synthesize the SM depudecin, a histone deacetylase inhibitor that contributes weakly to virulence. The DEP cluster includes genes encoding enzymes, a transporter, and a transcription regulator. We investigated the distribution and evolution of the DEP cluster in 585 fungal genomes and found a wide but sporadic distribution among Dothideomycetes, Sordariomycetes, and Eurotiomycetes. We confirmed DEP gene expression and depudecin production in one fungus, Fusarium langsethiae. Phylogenetic analyses suggested 6–10 horizontal gene transfers (HGTs) of the cluster, including a transfer that led to the presence of closely related cluster homologs in Alternaria and Fusarium. The analyses also indicated that HGTs were frequently followed by loss/pseudogenization of one or more DEP genes. Independent cluster inactivation was inferred in at least four fungal classes. Analyses of transitions among functional, pseudogenized, and absent states of DEP genes among Fusarium species suggest enzyme-encoding genes are lost at higher rates than the transporter (DEP3) and regulatory (DEP6) genes. The phenotype of an experimentally-induced DEP3 mutant of Fusarium did not support the hypothesis that selective retention of DEP3 and DEP6 protects fungi from exogenous depudecin. Together, the results suggest that HGT and gene loss have contributed significantly to DEP cluster distribution, and that some DEP genes provide a greater fitness benefit possibly due to a differential tendency to form network connections.
Authors
Line Johansen T. Lennartsson Anna Westin A. Iuga C.M. Ivascu Eveliina Kallioniemi Sølvi WehnAbstract
No abstract has been registered