Publications
NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.
2018
Abstract
No abstract has been registered
Authors
Tomas Persson Mats Höglind Marcel van Oijen Panu Korhonen Taru Palosuo Guillaume Jégo Perttu Virkajärvi Gilles Bélanger Anne-Maj GustavssonAbstract
Different forage grass models are used to simulate forage yield and nutritive attributes, but these models are seldom compared, particularly those for timothy (Phleum pratense L.), a widely grown forage grass species in agricultural regions with a cold temperate climate. We compared the models BASGRA, CATIMO and STICS for their predictions of timothy crude protein (CP) concentration, neutral detergent fibre (NDF) concentration and NDF digestibility (dNDF), three important forage nutritive attributes. Data on CP and NDF concentrations, and dNDF and the associated weather and soil data for seven cultivars, taken from eight field experiments in Canada, Finland, Norway, and Sweden, were divided into calibration and validation datasets. Model parameters were estimated for each cultivar separately (cultivar-specific calibration) and for all cultivars together (generic calibration), using different methods for the three models. Normalized root mean square error (RMSE) in prediction of CP concentration varied between 16 and 26% for BASGRA, 45 and 101% for CATIMO and 23 and 40% for STICS across the two calibration methods and the calibration and validation datasets. Normalised RMSE in prediction of NDF concentration varied between 8 and 13% for BASGRA, 14 and 21% for CATIMO and 8 and 12% for STICS, while for dNDF it varied between 7 and 22% for BASGRA, 7 and 38% for CATIMO and 5 and 6% for STICS. Cultivar-specific calibration improved the performance of CATIMO and STICS, but not BASGRA, compared with generic calibration. The prediction accuracy for NDF concentration and dNDF with the three models was within the same range or better than that for forage dry matter (DM) yield of timothy. Overall, the three models performed well in predicting some nutritive attributes and yield in Northern Europe and Canada, but improvements are required, particularly to increase the prediction accuracy of CP concentration.
Authors
Monica Suarez Korsnes Reinert KorsnesAbstract
Long-term video-based tracking of single A549 lung cancer cells exposed to three different concentrations of the marine toxin yessotoxin (YTX) reveals significant variation in cytotoxicity, and it confirms the potential genotoxic effects of this toxin. Tracking of single cells subject to various toxic exposure, constitutes a conceptually simple approach to elucidate lineage correlations and sub-populations which are masked in cell bulk analyses. The toxic exposure can here be considered as probing a cell population for properties and change which may include long-term adaptation to treatments. Ranking of pedigree trees according to a measure of “size,” provides definition of sub-populations. Following single cells through generations indicates that signaling cascades and experience of mother cells can pass to their descendants. Epigenetic factors and signaling downstream lineages may enhance differences between cells and partly explain observed heterogeneity in a population. Signaling downstream lineages can potentially link a variety of observations of cells making resulting data more suitable for computerized treatment. YTX exposure of A549 cells tends to cause two main visually distinguishable classes of cell death modalities (“apoptotic-like” and “necrotic-like”) with approximately equal frequency. This special property of YTX enables estimation of correlation between cell death modalities for sister cells indicating impact downstream lineages. Hence, cellular responses and adaptation to treatments might be better described in terms of effects on pedigree trees rather than considering cells as independent entities.
Authors
Siri Elise DybdalAbstract
Innovative approaches and technologies for Integrated Pest Management (IPM) to increase sustainable food production was the topic of the 3rd annual SMARTCROP meeting.
Abstract
No abstract has been registered
Authors
Lampros LamprinakisAbstract
No abstract has been registered
Authors
Zbyněk Hrkal Ketil Haarstad David Rozman Jan Těšitel Drahomira Kušová Eva Novotná Miroslav VáňaAbstract
The fast development of laboratory methods has revealed increased amounts of trace concentrations of pharmaceuticals and personal care products (PPCP) in waste waters in the Czech Republic. This paper focuses on the expected costs to solve this problem by quaternary treatment of waste water based on activated carbon filtration. The one-time investment costs in 155 wastewater treatment plants (WWTPs) with a capacity of over 10 000 population equivalent (PE) would represent an amount of around 300 million EUR. The increase in end-user operat-ing costs would be 0.4 EUR/m3, which would mean a 15% increase in water and sewage costs. A sociological survey showed that most respondents (65%) would agree with an increase in price but only by 10%. Currently the cost of the qua-ternary treatment of wastewater is based primarily on estimates. Therefore changes in legislation leading to stricter limits and an increase in the efficiency of wastewater treatment should be preceded by additional applied research.
Abstract
Pathogenic soft rot Enterobacteriaceae (SRE) belonging to the genera Pectobacterium and Dickeya cause diseases in potato and numerous other crops. Seed potatoes are the most important source of infection, but how pathogen-free tubers initially become infected remains an enigma. Since the 1920s, insects have been hypothesized to contribute to SRE transmission. To validate this hypothesis and to map the insect species potentially involved in SRE dispersal, we have analyzed the occurrence of SRE in insects recovered from potato fields over a period of 2 years. Twenty-eight yellow sticky traps were set up in 10 potato fields throughout Norway to attract and trap insects. Total DNA recovered from over 2,000 randomly chosen trapped insects was tested for SRE, using a specific quantitative PCR (qPCR) TaqMan assay, and insects that tested positive were identified by DNA barcoding. Although the occurrence of SRE-carrying insects varied, they were found in all the tested fields. While Delia species were dominant among the insects that carried the largest amount of SRE, more than 80 other SRE-carrying insect species were identified, and they had different levels of abundance. Additionally, the occurrence of SRE in three laboratory-reared insect species was analyzed, and this suggested that SRE are natural members of some insect microbiomes, with herbivorous Delia floralis carrying more SRE than the cabbage moth (Plutella xylostella) and carnivorous green lacewing larvae (Chrysoperla carnea). In summary, the high proportion, variety, and ubiquity of insects that carried SRE show the need to address this source of the pathogens to reduce the initial infection of seed material.
Authors
Lars Vesterdal Lise Dalsgaard Inge Stupak Arezoo Taghizadeh-toosi Lars Elsgaard Jørgen E. OlesenAbstract
No abstract has been registered
Abstract
The boreal forest is a key ecosystem for global C sequestration and storage. Microorganisms in soil have crucial functions in regulating these processes. Fungi are typically sharply structured with soil depth, but we largely lack such information for other microorganism, including bacteria and other micro-eukaryotes. To improve our knowledge of how different microorganisms are structured vertically and how they might interact, we investi-gated the communities of bacteria, fungi and micro-eukaryotes in four different soil horizons in natural birch forests in Western Norway. The communities of all three organismal groups were strongly structured along the vertical depth. Our results support the hypothesis that natural decrease in nutrient availability and pH differ-ences between organic and mineral horizons affect the distribution of soil microorganisms. Proteobacteria, Actinobacteria and Planctomycetes dominated in the uppermost organic layer while Acidobacteria and Firmicu-tes in mineral layers. Proportionally, fungi dominated in mineral layers whereas other micro-eukaryotes (Meta-zoa, Apicomplexa, Conosa, Ochrophyta and Chlorophyta) in organic layers. Ascomycota were relatively more abundant in mineral layers compared to Basidiomycota and Cryptomycota. Nematoda, Annelida and Arthropo-da showed decreasing trends with depth. Furthermore, different optima in the depth distribution of ectomy-corrhizal and saprotrophic genera was observed, supporting the view that different genera are adapted to different niches along the soil depth gradient. Network analyses will be used to infer tentative biotic interac-tions between the microbial groups and how this varies with soil depth.