Publications
NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.
2023
Authors
Junbin Zhao Simon Weldon Alexandra Barthelmes Erin Swails Kristell Hergoualc’h Ülo Mander Chunjing Qiu John Connolly Whendee L. Silver David CampbellAbstract
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Authors
Erlend Sørmo Katinka Muri Krahn Gudny Øyre Flatabø Thomas Hartnik Hans Peter Heinrich Arp Gerard CornelissenAbstract
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Authors
Yi Zhang Zhangmu Jing Yijing Feng Shuo Chen Yeqing Li Yongming Han Lu Feng Junting Pan Mahmoud Mazarji Hongjun Zhou Xiaonan Wang Chunming XuAbstract
Exploring key factors has important guidance for understanding complex anaerobic digestion (AD) systems. This study proposed a multi-layer automated machine learning framework to understand the complex interactions in AD systems and explore key factors at the environmental factor, microorganisms and system levels. The first layer of the framework identified hydraulic residence time (HRT) as the most important environmental factor, with an optimal range of 33–45 d. In the second layer of the framework, Methanocelleus (optimal relative abundance (ORA) = 3.0%) and Candidatus_Caldatribacterium (ORA = 1.7%) were found to be the key archaea and bacteria, respectively. Furthermore, the prediction of key microorganisms based on environmental factors and remaining microbial data showed the essential roles of Methanothermobacter and Acetomicrobium. The third layer for finding the optimal combination of data variables for predicting biogas production demonstrated that combined Archaea genera and environmental factors should be achieved for the most accurate prediction (root mean square error (RMSE) = 84.21). GBM had the best model performance and prediction accuracy among all the built-in models. Based on the optimal GBM model, the analysis at the system level showed that HRT was the most important variable. However the most important microorganism, Methanocelleus, within the appropriate survival range is also essential to achieve optimal biogas production. This research explores key parameters at various levels through automated machine learning techniques, which are expected to provide guidance in understanding the complex architecture of industrial and laboratory AD systems.
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Authors
Simo Maduna Ólöf Dóra Bartels Jónsdóttir Albert Kjartan Dagbjartarson Imsland Davíð Gíslason Patrick Reynolds Lauri Kapari Thor Arne Hangstad Kristian Meier Snorre HagenAbstract
Aquaculture of the lumpfish (Cyclopterus lumpus L.) has become a large, lucrative industry owing to the escalating demand for “cleaner fish” to minimise sea lice infestations in Atlantic salmon mariculture farms. We used over 10K genome-wide single nucleotide polymorphisms (SNPs) to investigate the spatial patterns of genomic variation in the lumpfish along the coast of Norway and across the North Atlantic. Moreover, we applied three genome scans for outliers and two genotype–environment association tests to assess the signatures and patterns of local adaptation under extensive gene flow. With our ‘global’ sampling regime, we found two major genetic groups of lumpfish, i.e., the western and eastern Atlantic. Regionally in Norway, we found marginal evidence of population structure, where the population genomic analysis revealed a small portion of individuals with a different genetic ancestry. Nevertheless, we found strong support for local adaption under high gene flow in the Norwegian lumpfish and identified over 380 high-confidence environment-associated loci linked to gene sets with a key role in biological processes associated with environmental pressures and embryonic development. Our results bridge population genetic/genomics studies with seascape genomics studies and will facilitate genome-enabled monitoring of the genetic impacts of escapees and allow for genetic-informed broodstock selection and management in Norway.
Authors
Cornelya KlutschAbstract
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Authors
Cornelya KlutschAbstract
No abstract has been registered
Authors
Cornelya KlutschAbstract
No abstract has been registered