Publications
NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.
2023
Authors
Tarja Sundell Juhana I. Kammonen Ella Mustanoja Vincent Biard Mervi Kunnasranta Marja Niemi Milaja Nykänen Tommi Nyman Jukka U. Palo Mia Valtonen Lars Paulin Jukka Jernvall Petri AuvinenAbstract
Fragmentation of isolated populations increases the risk of inbreeding and loss of genetic diversity. The endemic Saimaa ringed seal (Pusa hispida saimensis) is one of the most endangered pinnipeds in the world with a population of only ~ 400 individuals. The current genetic diversity of this subspecies, isolated in Lake Saimaa in Finland for ca. 1000 generations, is alarmingly low. We performed whole-genome sequencing on Saimaa ringed seals (N = 30) and analyzed the level of homozygosity and genetic composition across the individual genomes. Our results show that the Saimaa ringed seal population has a high number of runs of homozygosity (RoH) compared with the neighboring Baltic ringed seal (Pusa hispida botnica) reference population (p < 0.001). There is also a tendency for stillborn seal pups to have more pronounced RoH. Since the population is divided into semi-isolated subpopulations within the Lake Saimaa exposing the population to deleterious genomic effects, our results support augmented gene flow as a genetic conservation action. Based on our results suggesting inbreeding depression in the population, we recommend Pihlajavesi as a potential source and Southern Saimaa as a potential recipient subpopulation for translocating individuals. The Saimaa ringed seal is a recognized subspecies and therefore translocations should be considered only within the lake to avoid an unpredictable risk of disease, the introduction of deleterious alleles, and severe ecological issues for the population.
Authors
Simo Maduna Ólöf Dóra Bartels Jónsdóttir Albert Kjartan Dagbjartarson Imsland Davíð Gíslason Patrick Reynolds Lauri Kapari Thor Arne Hangstad Kristian Meier Snorre HagenAbstract
Aquaculture of the lumpfish (Cyclopterus lumpus L.) has become a large, lucrative industry owing to the escalating demand for “cleaner fish” to minimise sea lice infestations in Atlantic salmon mariculture farms. We used over 10K genome-wide single nucleotide polymorphisms (SNPs) to investigate the spatial patterns of genomic variation in the lumpfish along the coast of Norway and across the North Atlantic. Moreover, we applied three genome scans for outliers and two genotype–environment association tests to assess the signatures and patterns of local adaptation under extensive gene flow. With our ‘global’ sampling regime, we found two major genetic groups of lumpfish, i.e., the western and eastern Atlantic. Regionally in Norway, we found marginal evidence of population structure, where the population genomic analysis revealed a small portion of individuals with a different genetic ancestry. Nevertheless, we found strong support for local adaption under high gene flow in the Norwegian lumpfish and identified over 380 high-confidence environment-associated loci linked to gene sets with a key role in biological processes associated with environmental pressures and embryonic development. Our results bridge population genetic/genomics studies with seascape genomics studies and will facilitate genome-enabled monitoring of the genetic impacts of escapees and allow for genetic-informed broodstock selection and management in Norway.
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Habtamu AlemAbstract
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Junbin ZhaoAbstract
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Emmanuel Oladeji Alamu Michael Adesokan Segun Fawole Busie Maziya-Dixon Mehreteab Tesfai David ChikoyeAbstract
Gliricidia sepium (Jacq.) Walp is a well-known agroforestry leguminous tree that provides multiple benefits in different agroecological zones. Its apparent versatility is seen in improving animal feed, cleaningenvironmental wastes, and healing inflammations. It was also found to have significant benefits in agroforestry due to its ability to enhance soil fertility through nitrogen fixation and green manure. However, this article reviews the use of Gliricidia sepium to improve soil fertility and crop agronomic and nutritional properties. Google Scholar, PubMed, and Science Direct were the databases consulted for the relevant articles used in this review. Trees and leaves of G. sepium, either used as mulch, biochar, or intercropped, have enhanced soil fertility indicators, such as total soil carbon, nitrogen, phosphorus, available phosphorus, pH, cation exchange capacity, and soil organic matter in different farming systems. Its immense positive performance in improving the yield of crops led to an economic advantage for low-income farmers. G. sepium can also lower the use of mineral fertilizer as its adoption grows, leading to a greener environment in the agricultural sector. The review concluded that there is a plethora of research on the effect of Gliricidia on maize yield enhancement; hence further investigations should be conducted on using Gliricidia sepium as a green fertilizer to improve yields and the nutritional properties of other crops.