Publications
NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.
2009
Authors
Øystein Johnsen Igor A. Yakovlev Carl Gunnar FossdalAbstract
Temperature during zygotic and somatic embryogenesis regulates an epigenetic memory in Picea abies. Conditions colder than normal advance the timing of bud burst and bud set, whilst temperatures above normal delay the onset of these processes. The long-lasting memory affects growth and hardiness in the field. We made a search of candidate genes and micro RNAs that could regulate the memory, using specialized library sequencing approaches. Two subtracted cDNA libraries, representing genes that are mainly expressed in plants from a cold (CE) or a warm (WE) embryogenesis, revealed considerable differences in the transcriptomes. Many contigs were unknown. We used qRT-PCR to demonstrate that five genes with no matching in the database were differentially expressed in close correlation with the memory-induced differences in bud set. Partial sequencing of two concatemerized small RNA libraries revealed 199 different small RNAs, with predominant length of 21-nt. We found 24 novel candidate miRNAs among them, and 4 described earlier. Most of the predicted miRNA targets were related to unknown and “no-hit” genes, 5 target different disease-related genes, and 4 contigs were homologous to described functional genes. Using qRT-PCR we confirmed that three selected genes regulated by miRNAs pab-miR100, 175 and 176, could to be involved in the memory regulation. Additionally, several novel miRNAs; pab-miR080, 105, 119, 122, 132, 144a,b and 157 were differentially expressed between epigenetically distinct plants. Our data illustrates that micro RNAs will guide us to candidate genes that are putative elements in the epigenetic machinery, regulating the long-lasting memory that affects adaptive traits in this species.
Abstract
No abstract has been registered
Abstract
Two mature clones of Norway spruce (Picea abies (L.) Karst.) shown to have different level of resistance towards inoculation of Heterobasidion parviporum were compared with respect to spatiotemporal expression of transcripts related to biosynthesis of lignin, stilbenes and other phenolic compounds in response to fungal inoculation and physical wounding. Both clones responded to H. parviporum and physical wounding at transcriptional and chemical levels. Taxifolin, detected in the resistant clone only, increased in concentration following both wounding and inoculation. Concentrations of stilbenoid glucosides were highest in the susceptible clone. Following wounding or inoculation, concentrations of these glucosides increased in the susceptible clone, and quantities of their corresponding aglycones increased dramatically in both clones close to the treatment point. Significant changes in transcription were detected over the entire lesion length for all transcripts, and only the changes in a few transcripts indicated a response to inoculation with H. parviporum differing from that caused by wounding alone. The resistant clone had higher basal concentrations of lignin (LTGA) compared to the susceptible clone; concentrations increased in both clones after wounding and wounding plus inoculation treatments, but remained consistently higher in the resistant clone, suggesting higher lignin levels in the cell walls compared to the susceptible clone. In addition, the transcript level in the same clones was also measured the following year and we saw indications of primed defences for a number of gene products likely resulting from the inoculations performed 12 months prior.
Authors
Nadeem Yaqoob Jan Karlsson Benedicte Riber Albrectsen Halvor Solheim Carl Gunnar FossdalAbstract
In natural conditions plants are continuously exposed to number of pathogens both biotrophs and necrotrophs. To understand their defense response at the transcript level two clones C72 and C23 with differential level of resistance from the SwAsp collection were inoculated with a biotroph (Melampsora magnusiana Wagnar) and necrotroph (Ceratocysis spp.) and compared to wounded and healthy controls. Samples were collected in leaves and areas some distance away from the inoculation site to examine the long distance (systemic) defense responses at day, day3 and day14 post treatments. We performed microarray experiments on the necrotrophic and biothrophic interaction compared with the healthy controls and found that the two clones respond in widely different fashions to the treatments applied. Clone C23 showed almost no response to biotroph and necrotroph inoculations after 24 hours while clone 72 gave a clear defense response to both pathogens. We are now in the process of verifying these results and looking at additional time-points using qRT-PCR.
Authors
Carl Gunnar Fossdal Nadeem Yaqoob Halvor SolheimAbstract
The root-rot causing fungus Heterobasidion annosum senso lato is the most devastating pathogen of conifers in Europe. This pathogen enter Norway spruce trees trough the roots and colonizes the tree from within, growing as a saprophyte when established within the dead heartwood and acting as a necrotroph when in contact with living host tissue. The genome of this devastating pathogen has now been sequenced in collaboration with JGI and gene annotation is ongoing and genomic work is currently in progress (Stenlid et al. work in progress). We have worked with the host Norway spruce from a molecular perspective for more than ten years. Twenty percent of the trees in Norwegian spruce stands tend to be infected and this pathogen that can colonize ten meters up inside the trunk. The tree have defences against this pathogen and the attack can be fought off by the bark and living wood but not by the hearthwood. The tree has a unique defense against this internal attack by forming a reaction zone; in this case the host defense is directed inwardly by the still living sapwood toward the central colonized wood. We have in the last years studied the host responses to infection in Norway spruce clones at the transcriptional level and found that the speed of recognition and spatial defense signalling appears to be the hallmarks of trees with high degree of resistance. We strive to study both partners in this pathosystem from a molecular perspective, and are using suppressive subtractive hybridization (SSH) followed by Real-Time RT PCR verification to look at differentially expressed genes(Yakovlev et al. 2008). In addition the colonization profiles are followed on extracted gDNA using quantitative Real-Time PCR (Hietala et al. 2009).
Authors
Nicholas Clarke O. Janne Kjønaas Wenche Aas Kjell Andreassen Isabella Børja Harald Bratli Susanne Eich-Greatorex Toril Drabløs Eldhuset Kjersti Holt Hanssen Holger Lange Tonje Økland Ingvald Røsberg Trine Aulstad Sogn Volkmar TimmermannAbstract
In Norway, it is planned to double the stationary use of bioenergy from all sources by up to 14 TWh before 2020, with much of this increase coming from forest resources, including residues like branches and tops (which are not much used today) being removed after tree harvest. This removal will reduce the supply of nutrients and organic matter to the forest soil, and may in the longer term increase the risk for future nutrient imbalance, reduced forest production, and changes in biodiversity and ground vegetation species composition. However, field experiments have found contrasting results (e.g. Johnson and Curtis 2001; Olsson et al. 1996). Soil effects of increased biomass removal will be closely related to soil organic matter (SOM) dynamics, litter quality, and turnover rates. The SOM pool is derived from a balance between above- and below-ground input of plant material and decomposition of both plants and SOM. Harvest intensity may affect the decomposition of existing SOM as well as the build-up of new SOM from litter and forest residues, by changing factors like soil temperature and moisture as well as amount and type of litter input. Changes in input of litter with different nutrient concentrations and decomposition patterns along with changes in SOM decomposition will affect the total storage of carbon, nitrogen and other vital nutrients in the soil. To quantify how different harvesting regimes lead to different C addition to soil, and to determine which factors have the greatest effect on decomposition of SOM under different environmental conditions, two Norway spruce forest systems will be investigated in the context of a research project starting in 2008/2009, one in eastern and one in western Norway, representing different climatic and landscape types. At each location, two treatment regimes will be tested: Conventional harvesting, with residues left on-site (CH) Aboveground whole-tree harvest, with branches, needles, and tops removed (WTH). Input of different forest residues will be quantified post harvest. Soil water at 30 cm soil depth will be analysed for nutrients and element fluxes will be estimated to provide information about nutrient leaching. Soil respiration will be measured, along with lab decomposition studies under different temperature and moisture regimes. Long term in situ decomposition studies will be carried out in the WTH plots using three different tree compartments (needles, coarse twigs, fine roots) decomposing in litter bags, in order to determine their limit value. The structure of the fungal community will be determined by soil core sampling and use of molecular techniques allowing qualitative and quantitative estimation. Understorey vegetation will be sampled to determine the biomass, and the frequency of all vascular plants, bryophytes and lichens will be estimated. After harvesting, replanting will be carried out. Seedling survival, causes of mortality and potential damage, growth, and needle nutrients will be monitored. Results from these studies will be used to identify key processes explaining trends observed in two series of ongoing long-term whole-tree thinning trials. We shall combine knowledge obtained using field experiments with results of modelling and data from the Norwegian Monitoring Programme for Forest Damage and National Forest Inventory. This will help us to predict and map the ecologically most suitable areas for increased harvesting of branches and tops on a regional scale based on current knowledge, and to identify uncertainties and additional knowledge needed to improve current predictions.
Abstract
General questions that arise while investigating hydrological extremes are whether these have distinct spatial and temporal variations and how these variations are linked to mean flow conditions. We analyze a large set of European stream flow series. Based on daily observations we derive annual series of stream flow deciles ranging from the minimum to the maximum, resulting in a set of eleven series for each station representing the year to year variability of the flow regimes....
Abstract
Wood modification with furfuryl alcohol is an extensively investigated process and already produced commercially. Furfurylated wood is in the focus of a European project on its use for the production of high performance windows. Different wood species were treated with furfuryl alcohol and tested on water uptake, dimensional changes, leaching in water, resistance to fungal degradation, and ecotoxicity. The results show a reduced water uptake and a reduced swelling of the furfurylated wood samples. A high resistance against fungal attack of the treated wood samples can be shown. A low amount of furfuryl alcohol was leached out and the water samples of two different leaching tests showed in general low toxicity. Southern yellow pine showed good results in all of the tests and has potential for the production of window frames according to the tests performed.
Abstract
In recent years the market share for wooden window products has continuously decreased in Europe. Plastics and aluminum have partly replaced wooden window constructions. Service life and maintenance costs lead the customer to a preferable use of other materials than wood. Additionally the use of tropical hardwoods is decreasing because the market demands sustainable alternatives. A transnational research project is initiated to evaluate the use of an alternative wood material for the production of wooden windows. This project involves both, industry and research institutes from Germany, Sweden and Norway. The objective is to establish Kebony furfurylated wood within the window market of the involved countries. Furfurylation of wood using European timbers has been a research topic for many years and is already commercially produced for different applications. The treatment improves dimensional stability, durability and some mechanical properties. This paper presents the first part of the project, where wood properties such as dimensional stability, water sorption, ecotoxicity, capillary water uptake and water vapor diffusion are evaluated.
Authors
Peder GjerdrumAbstract
The Scots pine is one of the most important raw materials for the wood industry. The pine is straight and strong, and easily preservation treated. The objective of this study was to describe and analyse the accuracy of diameter observations by varying technologies, and to have a first indication for the applicability of RFID tracing logs in the pole industry. Observations were made on barked poles with calliper, 2D scanner and 3D scanner. The local variation in diameter can be indicated by a standard deviation of 3 to 5 mm for repeated observation in almost the same location, and the same magnitude for actual diameter profile deviation from a smoothed profile. In a 3D scanner, the amount of observed data is huge, making it a challenge to analyse, verify and calibrate the equipment. Nevertheless, the accuracy seems acceptable for observations on barked logs. The RFID technology might find uses in permanent applications, but it is still rather work consuming and expensive, and the commercial profit has so far not been identified.