Publications
NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.
2010
Abstract
The pinewood nematode (PWN) is one of the worst tree-killing exotic pests in East-Asian countries. The first European record of establishment in Portugal in 1999 triggered extensive surveys and contingency plans for eradication in European countries, including immediate removal of large areas of conifer host trees. Using Norway as an example, we applied a simulation model to evaluate the chance of successful eradication of a hypothetical introduction by the current contingency plan in a northern area where wilting symptoms are not expected to occur. Despite a highly variable spread of nematode infestations in space and time, the probability of successful eradication in 20 years was consistently low (mean 0.035, SE 0.02). The low success did not change significantly by varying the biological parameters in sensitivity analyses (SA), probably due to the late detection of infestations by the survey (mean 14.3 years). SA revealed a strong influence of management parameters. However, a high probability of eradication required unrealistic measures: achieving an eradication probability of 0.99 in 20 years required 10,000 survey samples per year and a host tree removal radius of 8,000 m around each detection point.
Abstract
The gas chromatography mass spectrometry (GC-MS) deconvolution reporting software (DRS) from Agilent Technologies has been evaluated for its ability as a screening tool to detect a large number ofpesticides in incurred and fortified samples extracted with acetone/dichloromethane/light petroleum(Mini-Luke method). The detection of pesticides is based on fixed retention times using retention timelocking (RTL) and full scan mass spectral comparison with a partly customer built automated massspectral deconvolution and identification system (AMDIS) database. The GC-MS was equipped with a programmable temperature vaporising (PTV) injector system which enables more sample to be injected.In a blind study of 52 real samples a total number of 158 incurred pesticides were found. In addition to the 85 pesticides found by manual interpretation of GC-NPD/ECD chromatograms, the DRS revealed 73 morepesticides (+46%). The DRS system also shows its potential to discover pesticides which are normally notsearched for (EPN in long beans from Thailand). A spiking experiment was performed to blank matricesof apple, orange and lettuce with 177 different pesticides at concentration levels 0.02 and 0.1 mg/kg. The samples were analysed on GC-MS full scan and the AMDIS match factor was used as a mass spectralquality criterion. The threshold level of the AMDIS match factor was set at 20 to eliminate most of thefalse positives. AMDIS match factors from 20 up to 69 are regarded only as indication of a positive hit andmust be followed by manual interpretation. Pesticides giving AMDIS match factors at ≥70 are regarded as identified. To simplify and decrease the large amount of data generated at each concentration level,the AMDIS match factors ≥20 was averaged (mean AMF) for each pesticide including the commodities and their replicates. Among 177 different pesticides spiked at 0.02 and 0.1 mg/kg level, the percentage of mean AMF values ≥70 were 23% and 80%, respectively. For 531 individual detections of pesticides (177pesticides×3 replicates) giving AMDIS match factor 20 in apple, orange and lettuce, the detection rates at 0.02 mg/kg were 71%, 63% and 72%, respectively. For the 0.1 mg/kg level the detection rates were 89%,85% and 89%, respectively. In real samples some manual interpretation must be performed in addition. However, screening by GC-MS/DRS is about 5-10 times faster compared to screening with GC-NPD/ECDbecause the time used for manual interpretation is much shorter and there is no need for re-injection on GC-MS for the identification of suspect peaks found on GC-NPD/ECD.
Authors
Venche Talgø G. Chastagner I. M. Thomsen T. Cech K. Riley K. Lange Sonja Klemsdal Arne StensvandAbstract
Current season needle necrosis (CSNN) has been a serious foliage disorder on true fir Christmas trees and bough material in Europe and North America for more than 25 y. Approximately 2-4 weeks after bud break, needles develop chlorotic spots or bands that later turn necrotic. The symptoms have been observed on noble fir (Abies procera), Nordmann fir (A. nordmanniana) and grand fir (A. grandis) on both continents. CSNN was reported as a physiological disorder with unknown aetiology from USA, Denmark, and Ireland, but was associated with the fungus Kabatina abietis in Germany, Austria and Norway. In 2007, a fungus that morphologically resembled K. abietis was isolated from symptomatic needle samples from Nordmann fir from Austria, Denmark, Germany, Norway, and USA. Sequencing of the internal transcribed spacer (ITS) region of ribosomal DNA of these cultures, plus a K. abietis reference culture from Germany (CBS 248.93), resulted in Hormonema dematioides, the imperfect stage of Sydowia polyspora, and thus the taxonomy is further discussed. Inoculation tests on Nordmann fir seedlings and transplants with isolates of S. polyspora from all five countries resulted in the development of CSNN symptoms. In 2009, S. polyspora was also isolated from symptomatic needles from Nordmann fir collected in Slovakia. (c) 2010 The British Mycological Society. Published by Elsevier Ltd. All rights reserved.
Abstract
The effect of potential resistance inducing chemicals on disease development of Fusarium head blight was studied in winter wheat (Triticum aestivum L.). As a pre-screening test, the effect of different treatments on development of Microdochium majus (syn. Microdochium nivale var. majus) was studied in detached leaves. Based on these tests, DL-3-aminobutyric acid, Bion (benzo-(1,2,3) thiadiazole-7-carbothioic acid S-methyl ester), and a foliar fertilizer containing potassium phosphite were selected for further studies. Greenhouse-grown winter wheat was sprayed with aqueous solutions of the potential resistance inducers 7 days prior to Fusarium culmorum point inoculation of the heads. Disease development was registered as number of bleached spikelets per inoculated spike. Spraying plants with the foliar fertilizer reduced the disease severity of F. culmorum by up to 40%. A reduced disease development of M. majus was also observed in detached leaves pre-treated with the foliar fertilizer. When the foliar fertilizer was added to the growth medium, a reduced in vitro growth of M. majus and F. culmorum was observed, indicating that the effect on disease development is at least partly due to a fungistatic effect. No significant reduction in disease development was observed in wheat pre-treated with DL-3-aminobutyric acid or Bion, although these compounds tended to reduce disease development, especially when applied in combination with other potential resistance inducers. We conclude that spraying winter wheat with a solution containing potassium phosphite can reduce development of M. majus and F. culmorum.
Abstract
P>Autumn growth of weeds (i) provides an opportunity for mechanical and chemical control in autumn and (ii) can be important for weed survival and infestation in the following spring. Growth characteristics of Elytrigia repens, Cirsium arvense and Sonchus arvensis in autumn were studied in 2004 and 2005, on plants of different origins and developmental stages (planted at various times from May to August). The plants were grown outdoors in large pots and were assessed during September and October each year. The study showed that (i) all species grew in autumn, but growth ceased and the species withered at different times; S. arvensis first, followed by C. arvense and then E. repens and (ii) less developed (i.e. younger) plants grew later in the autumn. This was demonstrated by leaf area development and biomass distribution during autumn. Older plants had a greater total biomass with relatively more rhizomes or creeping roots than younger plants. In young plants of C. arvense and S. arvensis, the biomass of creeping roots increased during autumn. The total biomass, however, changed little during autumn. These growth patterns indicate that E. repens will be the easiest, S. arvensis the most difficult and C. arvense in between, regarding control of these species in autumn.
Authors
Lars Olav Brandsæter H Fogelfors Haldor Fykse E Graglia RK Jensen Bo Melander J Salonen P VanhalaAbstract
The success of weed management aimed at depleting the regenerative structures of perennial weeds depends largely on the sprouting activity of rhizome and root buds. Seasonal variation in sprouting of these buds on Cirsium arvense, Sonchus arvensis and Elymus repens was studied for plants collected from Denmark, Finland, Norway and Sweden. At 2-week intervals from July to October, 5-cm fragments of roots or rhizomes were cut from plants grown in buckets and planted into soil in pots, half of which were placed immediately into growth chambers at 18 degrees C for 4 weeks. The other half of the pots were initially placed in a dark room at 2 degrees C for 4 weeks before being transferred to the same growth chamber, also for 4 weeks. During the growth chamber period, the numbers of emerged shoots in each pot were counted weekly. The sprouting activity of C. arvense and E. repens was relatively uniform during this period and bud dormancy was not apparent. In all ecotypes of S. arvensis, innate bud dormancy developed during the latter part of the growing season. For all three species, differences in sprouting readiness were found among ecotypes. The results imply that C. arvense and E. repens are more likely to be controlled by mechanical measures in autumn than S. arvensis.
Abstract
Isolates of Colletotrichum sublineolum were collected from different sorghum-producing regions of Ethiopia and divided into five groups based on their geographic origin. The growth rate of 50 isolates showed considerable variation: 1·7?5·8 mm day?1, mean 3·3 mm day?1. However, the isolates displayed little variation in colony colour and colony margin, except for isolates from the north, which were different from the others. Amplified fragment length polymorphism analysis of 102 isolates revealed much greater variations among the different groups. Dice similarity coefficients ranged from 0·32 to 0·96 (mean 0·78). Cluster analysis and principal coordinate analysis revealed a differentiation of the isolates according to their geographic origin, and both methods clearly indicated a genetic separation between the southern, the eastern and the other isolates. Analysis of molecular variance (amova) indicated a high level of genetic variation both among (42%) and within (58%) the C. sublineolum sampling sites in Ethiopia. The amova also indicated a high level of genetic differentiation (FST = 0·42) and limited gene flow (Nm = 0·343). The results of this study confirmed the presence of a highly diverse pathogen, which is in agreement with the existence of diverse host genotypes and widely ranging environmental conditions in sorghum-producing regions of the country. Such diversity should be taken into account in future breeding programmes to achieve an effective and sustainable disease management strategy.
Abstract
Norway spruce expresses a temperature-dependent epigenetic memory from the time of embryo development, which thereafter influences the timing bud phenology. MicroRNAs (miRNAs)are endogenous small RNAs, exerting epigenetic gene regulatory impacts. We have tested for their presence and differential expression. We prepared concatemerized small RNA libraries from seedlings of two full-sib families, originated from seeds developed in a cold and warm environment. One family expressed distinct epigenetic effects while the other not. We used available plant miRNA query sequences to search for conserved miRNAs and from the sequencing we found novel ones; the miRNAs were monitored using relative real time-PCR. Sequencing identified 24 novel and four conserved miRNAs. Further screening of the conserved miRNAs confirmed the presence of 16 additional miRNAs. Most of the miRNAs were targeted to unknown genes. The expression of seven conserved and nine novel miRNAs showed significant differences in transcript levels in the full-sib family showing distinct epigenetic difference in bud set, but not in the nonresponding full-sib family. Putative miRNA targets were studied. Norway spruce contains a set of conserved miRNAs as well as a large proportion of novel nonconserved miRNAs. The differentially expression of specific miRNAs indicate their putative participation in the epigenetic regulation.
Abstract
No abstract has been registered
Authors
Aruppillai Suthaparan Sissel Torre Arne Stensvand Maria Herrero Rolf Inge Pettersen David M. Gadoury Hans Ragnar GislerødAbstract
When rose plants bearing colonies of Podosphaera pannosa were placed in a wind tunnel, the number of conidia trapped was directly proportional to intensity of daylight-balanced (white) light from 5 to 150 mu mol m(-2) s(-1). Illumination of samples using blue (420 to 520 nm) light-emitting diodes (LEDs) increased the number of conidia trapped by a factor of approximately 2.7 over white light but germination of conidia under blue light was reduced by approximately 16.5% compared with conidia germination under white light. The number of conidia trapped under far-red (>685 nm) LEDs was approximately 4.7 times higher than in white light, and 13.3 times higher than under red (575 to 675 nm) LEDs, and germination was not induced compared with white light. When mildewed plants were exposed to cycles of 18 h of white light followed by 6 h of blue, red, far-red light, or darkness, light from the red LEDs reduced the number of conidia trapped by approximately 88% compared with darkness or far-red light. Interrupting the above dark period with 1 h of light from red LEDs also reduced the number of conidia trapped, while a 1-h period of light from far-red following the 1 h of light from red LEDs nullified the suppressive effect of red light. Our results indicate that brief exposure to red light during the dark interval may be as effective as continuous illumination in suppressing powdery mildew in greenhouse rose plant (Rosa x hybrida).