Publications
NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.
2021
Authors
Tor MykingAbstract
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Authors
Sunil Mundra O. Janne Kjønaas Luis Morgado Anders Kristian Krabberød Yngvild Ransedokken Håvard KauserudAbstract
Soil depth represents a strong physiochemical gradient that greatly affects soil-dwelling microorganisms. Fungal communities are typically structured by soil depth, but how other microorganisms are structured is less known. Here, we tested whether depth-dependent variation in soil chemistry affects the distribution and co-occurrence patterns of soil microbial communities. This was investigated by DNA metabarcoding in conjunction with network analyses of bacteria, fungi, as well as other micro-eukaryotes, sampled in four different soil depths in Norwegian birch forests. Strong compositional turnover in microbial assemblages with soil depth was detected for all organismal groups. Significantly greater microbial diversity and fungal biomass appeared in the nutrient-rich organic layer, with sharp decrease towards the less nutrient-rich mineral zones. The proportions of copiotrophic bacteria, Arthropoda and Apicomplexa were markedly higher in the organic layer, while patterns were opposite for oligotrophic bacteria, Cercozoa, Ascomycota and ectomycorrhizal fungi. Network analyses indicated more intensive inter-kingdom co-occurrence patterns in the upper mineral layer (0–5 cm) compared to the above organic and the lower mineral soil, signifying substantial influence of soil depth on biotic interactions. This study supports the view that different microbial groups are adapted to different forest soil strata, with varying level of interactions along the depth gradient.
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No abstract has been registered
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The purpose of this research is to develop a method for estimating the spatially and temporally resolved moisture content of thermally modified Scots pine (Pinus sylvestris) using remote sensing. Hyperspectral time series imaging in the NIR wavelength region (953–2516 nm) was used to gather information about the absorbance of eight thermally modified pine samples each minute as they dried during a period of approximately 20 h. After preprocessing the collected spectral data and identifying an appropriate wavelength selection, partial least squares regression (PLS) was used to map the absorbance data of each pine sample to a distribution of moisture contents within the samples at different time steps during the drying process. To enable separate studying and comparison of the drying dynamics taking place within the early- and latewood regions of the pine samples, the collected images were spatially segmented to separate between early- and latewood pixels. The results of the study indicate that the 1966–2244 nm region of a NIR spectrum, when preprocessed with extended multiplicative scatter correction and first order derivation, can be used to model the average moisture content of thermally modified pine using PLS. The methods presented in this paper allows for estimation and visualization of the intrasample spatial distribution of moisture in thermally modified pine wood.
Abstract
During a three-day field trip to the Gaupne area, Luster kommune, three main localities were visited in search of lichens. A total of 35 lichens or lichenicolous fungi were found to be new to Sogn og Fjordane, most of which are also rare on a national scale. Three species on rocks, Calogaya biatorina, Lecanora gisleriana and L. subaurea, are red-listed and two species, Blastenia monticola and Caloplaca squamuleoisidiata, are new to Norway. Most of the species new to Sogn og Fjordane are calcicolous or prefer siliceous rocks containing high levels of heavy metals. The area around Gaupne is shown to be a previously unknown lichen hot-spot.
Authors
Johannes BreidenbachAbstract
No abstract has been registered
Authors
Johannes BreidenbachAbstract
No abstract has been registered
Authors
Johannes BreidenbachAbstract
No abstract has been registered
Authors
Fatima Heinicke Xiangfu Zhong Siri Tennebø Flåm Johannes Breidenbach Magnus Leithaug Marthe Thoresen Mæhlen Siri Lillegraven Anna-Birgitte Aga Ellen Sauar Norli Maria Dahl Mjaavatten Espen Andre Haavardsholm Manuela Zucknick Simon Rayner Benedicte Alexandra LieAbstract
Rheumatoid arthritis (RA) is a complex disease with a wide range of underlying susceptibility factors. Recently, dysregulation of microRNAs (miRNAs) in RA have been reported in several immune cell types from blood. However, B cells have not been studied in detail yet. Given the autoimmune nature of RA with the presence of autoantibodies, CD19+ B cells are a key cell type in RA pathogenesis and alterations in CD19+ B cell subpopulations have been observed in patient blood. Therefore, we aimed to reveal the global miRNA repertoire and to analyze miRNA expression profile differences in homogenous RA patient phenotypes in blood-derived CD19+ B cells. Small RNA sequencing was performed on CD19+ B cells of newly diagnosed untreated RA patients (n=10), successfully methotrexate (MTX) treated RA patients in remission (MTX treated RA patients, n=18) and healthy controls (n=9). The majority of miRNAs was detected across all phenotypes. However, significant expression differences between MTX treated RA patients and controls were observed for 27 miRNAs, while no significant differences were seen between the newly diagnosed patients and controls. Several of the differentially expressed miRNAs were previously found to be dysregulated in RA including miR-223-3p, miR-486-3p and miR-23a-3p. MiRNA target enrichment analysis, using the differentially expressed miRNAs and miRNA-target interactions from miRTarBase as input, revealed enriched target genes known to play important roles in B cell activation, differentiation and B cell receptor signaling, such as STAT3, PRDM1 and PTEN. Interestingly, many of those genes showed a high degree of correlated expression in CD19+ B cells in contrast to other immune cell types. Our results suggest important regulatory functions of miRNAs in blood-derived CD19+ B cells of MTX treated RA patients and motivate for future studies investigating the interactive mechanisms between miRNA and gene targets, as well as the possible predictive power of miRNAs for RA treatment response.