Publications
NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.
2017
Abstract
No abstract has been registered
Authors
Ned B. Klopfenstein Jane E. Stewart Yuko Ota John W. Hanna Bryce A. Richardson Amy L. Ross-Davis Rubén D. Elías-Román Kari Korhonen Nenad Djuro Keča Eugenia Iturritxa, Dionicio Alvarado-Rosales Halvor Solheim Nicholas J. Brazee Piotr Łakomy Michelle R. Cleary Eri Hasegawa Taisei Kikuchi Fortunato Garza-Ocañas Panaghiotis Tsopelas Daniel Rigling Simone Prospero, Tetyana Tsykun Jean A. Bérubé Franck O.P. Stefani Saeideh Jafarpour Vladimír Antonín Michal Tomšovský Geral I. McDonald Stephen Woodward Mee-Sook KimAbstract
Armillaria possesses several intriguing characteristics that have inspired wide interest in understanding phylogenetic relationships within and among species of this genus. Nuclear ribosomal DNA sequence– based analyses of Armillaria provide only limited information for phylogenetic studies among widely divergent taxa. More recent studies have shown that translation elongation factor 1-α (tef1) sequences are highly informative for phylogenetic analysis of Armillaria species within diverse global regions. This study used Neighbor-net and coalescence-based Bayesian analyses to examine phylogenetic relationships of newly determined and existing tef1 sequences derived from diverse Armillaria species from across the Northern Hemisphere, with Southern Hemisphere Armillaria species included for reference. Based on the Bayesian analysis of tef1 sequences, Armillaria species from the Northern Hemisphere are generally contained within the following four superclades, which are named according to the specific epithet of the most frequently cited species within the superclade: (i) Socialis/Tabescens (exannulate) superclade including Eurasian A. ectypa, North American A. socialis (A. tabescens), and Eurasian A. socialis (A. tabescens) clades; (ii) Mellea superclade including undescribed annulate North American Armillaria sp. (Mexico) and four separate clades of A. mellea (Europe and Iran, eastern Asia, and two groups from North America); (iii) Gallica superclade including Armillaria Nag E (Japan), multiple clades of A. gallica (Asia and Europe), A. calvescens (eastern North America), A. cepistipes (North America), A. altimontana (western USA), A. nabsnona (North America and Japan), and at least two A. gallica clades (North America); and (iv) Solidipes/Ostoyae superclade including two A. solidipes/ostoyae clades (North America), A. gemina (eastern USA), A. solidipes/ostoyae (Eurasia), A. cepistipes (Europe and Japan), A. sinapina (North America and Japan), and A. borealis (Eurasia) clade 2. Of note is that A. borealis (Eurasia) clade 1 appears basal to the Solidipes/Ostoyae and Gallica superclades. The Neighbor-net analysis showed similar phylogenetic relationships. This study further demonstrates the utility of tef1 for global phylogenetic studies of Armillaria species and provides critical insights into multiple taxonomic issues that warrant further study.
Authors
Kalev Adamson Martin S. Mullett Halvor Solheim Irene Barnes Michael M. Müller Jarkko Hantula Martti Vuorinen Audrius Kačergius Svetlana Markovskaja Dmitry L. Musolin Kateryna Davydenko Nenad Keča Karli Ligi Rasa D. Priedite Hanna Millberg Rein DrenkhanAbstract
Dothistroma septosporum, a notorious pine needle pathogen with an unknown historical geographic origin and poorly known distribution pathways, is nowadays found almost in all areas inhabited by pines (Pinus spp.). The main aim of this study was to determine the relationship between North European and East Asian populations. In total, 238 Eurasian D. septosporum isolates from 11 countries, including 211 isolates from northern Europe, 16 isolates from Russian Far East and 11 isolates from Bhutan were analysed using 11 species-specific microsatellite and mating type markers. The most diverse populations were found in northern Europe, including the Baltic countries, Finland and European Russia. Notably, D. septosporum has not caused heavy damage to P. sylvestris in northern Europe, which may suggest a long co-existence of the host and the pathogen. No indication was obtained that the Russian Far East or Bhutan could be the indigenous area of D. septosporum, as the genetic diversity of the fungus there was low and evidence suggests gene flow from northern Europe to Russian Far East. On the western coast of Norway, a unique genetic pattern was observed, which differed from haplotypes dominating other Fennoscandian populations. As an agent of dothistroma needle blight, only D. septosporum was documented in northern Europe and Asia, while D. pini was found in Ukraine and Serbia.
Authors
Kalev Adamson Rein Drenkhan Martin Mullett Halvor Solheim Irene Barnes Michael Müller Jarkko HantulaAbstract
No abstract has been registered
Authors
Robert Jankowiak Beata Strzałka Piotr Bilański Riikka Linnakoski Truls Aas Halvor Solheim Małgorzata Groszek Z. Wilhelm de BeerAbstract
Species of Leptographium are generally characterized by mononematous conidiophores and are commonly associated with bark beetles and weevils. These species are responsible for sapstain and in some cases serious diseases on a range of primarily coniferous trees. In comparison with coniferous trees, the occurrence of Leptographium species on hardwood trees has been poorly studied in Europe. During a survey of ophiostomatoid fungi on various tree species in Norway and Poland, three unusual species, which fit the broader morphological description of Leptographium spp., were found in association with Scolytus ratzeburgi, Dryocoetes alni and Trypodendron domesticum on a variety of hardwoods, and from wounds on Tilia cordata. Phylogenetic analyses of sequence data for three gene regions (ITS2-LSU, β-tubulin, and TEF1-α) showed that these Leptographium species are phylogenetically closely related to each other and form a well-supported lineage that included Grosmannia grandifoliae and Leptographium pruni. The first species could be distinguished from the other Leptographium species based on conidiophores arising from spiral hyphae, chlamydospore-like structures and a hyalorhinocladiella-like synanamorph in culture. The second species differs from the previous one by having distinctly shorter conidiophores and smaller conidia. This species also produces a well-developed sporothrix-like synanamorph with denticulate conidiogenous cells. Based on these unusual morphological characteristics and distinct DNA sequences, these fungi were recognised as new taxa for which the names Leptographium trypodendri sp. nov. and L. betulae sp. nov. are provided. The third group of isolates belonged to Grosmannia grandifoliae, representing the first report of this species outside of the USA. The newly defined G. grandifoliae complex is the first species complex in Leptographium s.l. consisting of only hardwood-infecting species.
Authors
Alemayehu Getachew Assefa Alemayehu Chala Ingerd Skow Hofgaard May Bente Brurberg Michael Sulyok Anne Marte TronsmoAbstract
The natural occurrence of fungi, mycotoxins and fungal metabolites was investigated in 100 samples of maize grains collected from south and southwestern Ethiopia in 2015. The maize samples were contaminated by Fusarium, Aspergillus and Penicillium species. Using liquid chromatography tandem mass spectrometry 127 secondary metabolites were analysed. Zearalenone was the most prevalent mycotoxin, occurring in about 96% of the samples. Zearalenone sulfate was the second most prevalent, present in 81% of the samples. Fumonisin B1 was detected in 70% of the samples with a mean level of 606 μg kg−1 in positive samples, while FB2, FB3 and FB4 were detected in 62%, 51% and 60% of the maize samples with mean levels of 202, 136 and 85 μg kg−1, respectively. Up to 8% of the samples were contaminated with aflatoxins, with a maximum level of aflatoxin B1 of 513 μg kg−1. Results were higher than earlier reports for maize from Ethiopia.
Abstract
Field trials of Abies lasiocarpa were undertaken with the aim of assessing the potential for Christmas tree production in Denmark. Twenty-six provenances originating from Alaska to New Mexico were tested. Damage by the insect Adelges piceae and the fungus Neonectria neomacrospora was recorded for the first time 8 and 12 years after the initial planting. Damage from N. neomacrospora increased rapidly in the period 12–15 years after planting. Trees from the northern provenances and humid climates exhibited less damage than those from southern ones. Previous attack by A. piceae had a minor effect on N. neomacrospora infection. Greenhouse tests showed that detached shoots from healthy Abies lasiocarpa can be used to rank provenances for resistance to N. neomacrospora, but results varied according to host subspecies.
Authors
Johanna Witzell Iryna Matsiakh Leopold Poljakovic-Pajnik Marc Kenis Venche Talgø Hans Peter Ravn Marek Barta Michelle ClearyAbstract
No abstract has been registered
Abstract
No abstract has been registered
Authors
Iryna Matsiakh Dimitrios N. Avtzis Kalev Adamson Sylvie Augustin Refika Ceyda Beram Thomas Cech Rein Drenkhan Natalia Kirichenko Giorgio Maresi Carmen Morales-Rodriguez Leopold Poljakovic-Pajnik Alain Roques Venche Talgø Anna Maria Vettraino Johanna WitzellAbstract
No abstract has been registered