Publications
NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.
2002
Authors
Wim de Vries Gert Jan Reinds H.F. van Dobben D. de Zwart Dan Aamlid P. Neville M. Posch J. Auée J.C.H. Voogd E.M. VelAbstract
No abstract has been registered
Abstract
Determining the level of pathogenic fungi and other microorganisms during colonization of the host is central in phytopathological studies. A direct way to monitor fungal hyphae within the host is microscopic examination, but chitin and ergosterol-levels are commonly used to indirectly measure the amount of fungus present. Recently real-time PCR technology is being used to follow infection agents in host tissues. We study the molecular basis of host defense responses, using the coniferous host Norway spruce infected with the pathogen Heterobasidion parviporum as the experimental system. This basidiomycete and the closely related pathogen H. annosum are the major root rot causing pathogens in conifers. To screen host material for differential resistance towards H. parviporum, it is a necessity to quantify the fungal colonization of the host tissues. Therefore, we aimed to develop and compare the sensitivity of a real-time PCR to an ergosterol based method for determining the rate of colonization, and applied the methods to rank the infection level of the pathogen on the spruce clones 053 and 589. We developed a quantitative multiplex real-time PCR procedure that reliably detecting down to 1pg H. parviporum DNA and 1ng host DNA. There was a very high correlation between the fungal-biomass/total-biomass and fungal-DNA/total-DNA rankings obtained with ergosterol and real-time PCR, strengthening the credibility of both methods. Based on both ergosterol and real-time PCR, it was clear that the clone 053 was hosting more fungal biomass than clone 589. The results indicate that this real-time procedure can be a useful method to screen different spruce material for their relative resistance to the pathogen H. parviporum.
Abstract
Several strong westerly storms hit Western Norway during the winter of 1986-87. We studied the uptake, loss and visible effects of sea salt aerosols in Scots pine and Norway spruce. Foliage of was sampled at distances 0-100 km from the coastline between 59¢ª and 65¢ª N, and analysed for chloride, sodium and other elements. The range of chloride and sodium concentrations in needles was 0.5-5.0, and 0.1-3.0 mg g-1, respectively. The local variation was very large close to the coast. The relation to distance from the sea was improved by using distance from the nearest fjord rather than from the outer coastline. Other elements were less variable and not related to distance from the sea, or to sea salt concentrations. Only 1-10% of the needles sea salt content could be removed by 2 minutes washing in distilled water, and still much less of other elements. The amount of sea salt removed by washing was less related to distance from the sea than was the total content. Visible damage to the foliage occurred at chloride concentrations above 1 mg g-1 in the needles. Our conclusions are that analysis of the needles chloride or sodium content is a robust method for confirming damage to tree foliage by sea salt aerosols. Fjords as well as the ocean are significant sources of sea salt aerosols. Large local variation in salt deposition and damage will occur at a rugged coast. Nutrients and other elements are not significantly affected by the sea salt deposition. The use of chloride or sodium as a tracer for dry deposition should take into account not only the enrichment of these elements in canopy throughfall, but also the accumulation in the needles.
Abstract
No abstract has been registered
Abstract
A quantitative multiplex real-time PCR procedure was developed to monitor the dynamics in Norway spruce (Heterobasidion annosum) pathosystem. The assay reliably detected down to 1 pg of H. annosum DNA and 1 ng of host DNA in multiplex conditions. As a comparative method for quantifying fungal colonization,we applied the ergosterol assay. There was a very high correlation between the results obtained with the two methods, this strengthening the credibility of both assays. The advantages and disadvantages of these assays are discussed.
Authors
S. Kobro Halvor SolheimAbstract
No abstract has been registered
Authors
Halvor SolheimAbstract
No abstract has been registered
Abstract
No abstract has been registered
Abstract
Cleaning of containers to counteract infection that might cause root dieback should remove old, adhering media and roots that may harbour pathogens. This study investigated seedling growth and the number of viable fungal propagules retained on the container cavity walls as a result of different container cleaning treatments: washing with cold water (ca 8C) only, or in addition with a bath temperature of 60, 70, 80 or 95C for 30 seconds.More fungal propagules were isolated from containers washed in cold water, than from the other treatments. The most frequently isolated fungi were Paecilomyces sp. and Penicillium sp., which are well known saprophytes. Bacteria and yeast did not seem to be affected by the washing.Electron microscopy studies of container cavity walls revealed many organic particles and fungal spores on the walls of coldwashed containers. Among other fungal spores there were visible chains of Paecilomyces spp. spores.Containers that were washed at 80C had some organic debris attached to the cavity walls, but no spores were visible. In used and unwashed containers fungal spores, hyphae and organic debris were found on the container cavity walls. Containers in which the major part of the seedlings previously had suffered from root dieback might have contained a considerable amount of inoculum before washing.Almost 60% of the seedlings grown in unwashed containers had dead or very stunted root systems, whereas about 10% of the seedlings in cold washed containers suffered from severe root dieback. Additional warm water treatment further reduced the root dieback of this group of containers. In unwashed containers in which healthy seedlings had been grown, about 4% seedlings and after cold washing no seedlings with root dieback were observed.The cold washing procedure had a positive effect on seedling height, but there was no additional effect of the warm water treatment. We conclude that cold pressurised washing alone does not provide adequate control of root dieback and that an additional warm water bath of at least 60C is recommended.
2001
Abstract
Epiphytic lichen vegetation on birch stems was studied in the border areas between Norway and Russia. The area is heavily influenced by sulphur dioxide pollution emitted from Russian nickel smelters.Hypogymnia physodes and Melanelia olivacea were the two most abundant lichen species on birch stems in the investigated area. However, the coverage of H. physodes and M. olivacea was clearly reduced in parts of the investigated area. The lichen vegetation increased with increasing distance from the pollution source, i.e. from a lichen desert to normal background levels. A different pattern of occurrence of the two lichen species was observed.