Publications
NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.
2021
Authors
Beatrix Alsanius Christer Magnusson Mogens Nicolaisen Sandra A.I. Wright Per Hans Micael Wendell Paal Krokene Johan Stenberg Iben Margrete Thomsen Trond RafossAbstract
Key words: VKM, risk assessment, Norwegian Scientific Committee for Food and Environment, Norwegian Food Safety Authority, Norwegian Environment Agency, Biowaste, Compost, Plant health, organic waste, Phytosanitary safety, Biogas, Alien organisms Introduction The Norwegian Food Safety Authority (NFSA) and the Norwegian Environment Agency (NEA) have jointly asked the Norwegian Scientific Committee for food and environment for an assessment into treatment methods and validation methods for compost and digestate based on organic waste in relation to plant health and the spread of harmful alien organisms in Norway. The Norwegian Food Safety Authority will use the report in its supervisory work over companies that produce compost and digestate. The assessment will also provide important input for the regulatory development of several current regulations including regulations on indicator organisms that are used to validate new methods and ensure adequate security with regards to the survival of plant pests. The Norwegian Environment Agency wants to establish whether the methods used in the composting of garden waste and other types of plant waste today are able to ensure that the finished product does not become a source for the spread of harmful alien organisms. This will form the basis for the Norwegian Environment Agency’s guidelines relating to the precautionary provisions in the regulation on alien organisms. This request is limited to an assessment of plant pests and harmful alien organisms (hereinafter alien organisms). The survival of infectious diseases harmful to people and animals is considered in separate assessments. Methods We have conducted initiating workshops for identifying relevant fundamental processes and parameters, of relevant organisms and of relevant search terms for the literature surveys, as well as for discussion and validation. Visits to composting facilities and contact with stakeholders in Norway were also conducted. This information was further implemented in an extensive literature search. This assessment include/encompass organic waste and other materials that are currently treated in biogas and composting facilities, including garden and park waste (incl. soil), plant waste from garden centres, etc., food waste and waste from the food and animal feed industry (including grain/seed husks and waste from enterprises which package and process potatoes and vegetables), manure, bulking agents used in composting facilities, and husks from contracted grain/seed cleaners for sowing. We have used a quantitative risk assessment. The level of confidence in the risk assessment is described, and uncertainties and data gaps identified. Furthermore, we have used re-submission commenting and external expert reviewing before final approval and publication. ...........
Abstract
Plants with roots and soil clumps transported over long distances in plant trading can harbor plant pathogenic oomycetes, facilitating disease outbreaks that threaten ecosystems, biodiversity, and food security. Tools to detect the presence of such oomycetes with a sufficiently high throughput and broad scope are currently not part of international phytosanitary testing regimes. In this work, DNA metabarcoding targeting the internal transcribed spacer (ITS) region was employed to broadly detect and identify oomycetes present in soil from internationally shipped plants. This method was compared to traditional isolation-based detection and identification after an enrichment step. DNA metabarcoding showed widespread presence of potentially plant pathogenic Phytophthora and Pythium species in internationally transported rhizospheric soil with Pythium being the overall most abundant genus observed. Baiting, a commonly employed enrichment method for Phytophthora species, led to an increase of golden-brown algae in the soil samples, but did not increase the relative or absolute abundance of potentially plant pathogenic oomycetes. Metabarcoding of rhizospheric soil yielded DNA sequences corresponding to oomycete isolates obtained after enrichment and identified them correctly but did not always detect the isolated oomycetes in the same samples. This work provides a proof of concept and outlines necessary improvements for the use of environmental DNA (eDNA) and metabarcoding as a standalone phytosanitary assessment tool for broad detection and identification of plant pathogenic oomycetes.
Authors
Johan A. Stenberg Kjetil K. Melby Christer Magnusson Anders Nielsen Julie Rydning Micael Wendell Beatrix Alsanius Paal Krokene Mogens Nicolaisen Iben M. Thomsen Sandra A. I. Wright Trond RafossAbstract
Key words: VKM, risk assessment, Norwegian Scientific Committee for Food and Environment, Norwegian Food Safety Authority, biological control, Nematodes, Phasmarhabditis californica, Moraxella osloensis. Parasitic nematodes and associated bacteria are increasingly being used for biocontrol of molluscs. Functionally, it is the bacteria that kill and thus control the targeted pests, but the function of the bacteria is dependent on the nematodes, which should be regarded as vectors of biocontrol. Although the nematodes and the bacteria have a symbiotic relationship within such biocontrol formulations, it should be noted that they are not dependent on each other in the wild, but can establish separate populations which can be free-living or hosted by other organisms. The biocontrol product Nemaslug 2.0 contains the nematode Phasmarhabditis californica (strain P19D) and the bacterial symbiont Moraxella osloensis (unknown strain). The nematode was first described in 2016 and has never been reported in Norway. The lack of reports suggests that it is absent from Norway, but this conclusion comes with a high degree of uncertainty since there have been limited search efforts. The climatic thresholds of the nematode are not known, but its current distribution, spanning widely varying climates, suggests that it could survive and establish in Norway. Natural spread from currently known areas of establishment to natural habitats in Norway is ruled out due to the nematode’s limited dispersal capacity. However, human-assisted spread (e.g. via the use of biocontrol products) and establishment would be likely if Nemaslug 2.0 is allowed for use in open fields in Norway. Use of Nemaslug 2.0 in greenhouses and other enclosed areas is not likely to facilitate spread to natural habitats in Norway provided that residues are properly handled. However, deposition of product residues from greenhouses to outdoor areas may result in local establishment of the nematode in the vicinity of the deposition. Phasmarhabditis californica has a broad host range and may parasitize both rare/endangered and common mollusc species. However, there is no scientific evidence suggesting that the nematode can affect natural populations of molluscs in wild habitats, or otherwise have negative effects on biodiversity. The nematodes’ association with the bacteria Moraxella osloensis is most likely lost, or at least weakened, in natural habitats, suggesting that the nematode becomes less capable of killing its hosts in the wild. Phasmarhabditis californica is not capable of harming or infecting humans. The bacterial species Moraxella osloensis is already present in Norway in a few locations and at a low abundance, and it may be native to Norway. Little is known regarding its distribution in natural environments, but the literature shows that it can infect humans and other mammals. In humans with immunodeficiency or other comorbidities, M. osloensis can cause meningitis, vaginitis, sinusitis, bacteremia, endocarditis, and septic arthritis. The risk of infection in people handling Nemaslug 2.0 can probably be substantially reduced by protective clothing and appropriate handling. We are not aware of any reported health issues arising from use of the previous version of Nemaslug, which also contains M. osloensis. Different strains of M. osloensis are known to vary in their sensitivity to antibiotics, and likely in other traits too. Thus, the lack of information provided about the strain identity and specific characteristics of the strain used in Nemaslug 2.0 generates a high degree of uncertainty regarding its pathogenicity, climate tolerance, sensitivity to antibiotics etc.
Authors
Jan M. van der Wolf Ivette Acuña Solke H. De Boer May Bente Brurberg Greig Cahill Amy O. Charkowski Teresa Coutinho Triona Davey Merete Wiken Dees Yeshitila Degefu Brice Dupuis John G. Elphinstone Jiaqin Fan Esmaeil Fazelisanagri Thomas Fleming Nahid Gerayeli Vladimir Gorshkov Valérie Helias Yves le Hingrat Steven B. Johnson Andreas Keiser Isabelle Kellenberger Xiang (Sean) Li Ewa Lojkowska Rodney Martin Juliana Perminow Olga Petrova Agata Motyka-Pomagruk Simeon Rossmann Santiago Schaerer Wojciech Sledz Ian K. Toth Leah Tsror Jacquie E. van der Waals Patrice de Werra Iris YedidiaAbstract
Soft rot Pectobacteriaceae (SRP) are ubiquitous on earth as there are records of findings from all continents where host plants are grown. This chapter describes information on soft rot diseases on these continents. For some countries, detailed information is provided by local experts on the SRP present, their economic damage, and the management strategies applied for their control. The focus of the chapter is mainly on SRP as causative agents of potato blackleg, although in specific cases details are provided on SRP in other host plants. In Europe, the SRP cause important economic losses mainly on potato, with most species described in the literature being found. In Latin America significant losses are also reported due to potato diseases caused by various Dickeya and Pectobacterium species, while in Australia and Oceania, recent outbreaks of D. dianthicola in potato have resulted in high economic losses. In Asia, however, SRP cause economic losses mainly in vegetable crops other than potato, while in North America SRP cause diseases on a wide range of crops (including potato and ornamental plants) in both field and storage. In Africa SRP are only known to occur in 17 of the 54 African countries but where it is known, potato is the most affected crop.
Authors
Paal Krokene Bjørn Arild Hatteland Christer Magnusson Daniel Flø Iben Margrete Thomsen Johan A. Stenberg May Bente Brurberg Per Hans Micael Wendell Mogens Nicolaisen Simeon Rossmann Venche Talgø Beatrix Alsanius Sandra A.I. Wright Trond RafossAbstract
No abstract has been registered
Authors
Andrii Butkovskyi Yuying Jing Hege Bergheim Diana Lazar Ksenia Gulyaeva Sven R. Odenmarck Hans Ragnar Norli Karolina M. Nowak Anja Miltner Matthias Kästner Trine EggenAbstract
Pesticides in agricultural surface water runoff cause a major threat to freshwater systems. Installation of filter systems or constructed wetlands in areas of preferential run-off is a possible measure for pesticides abatement. To develop such systems, combinations of filter materials suitable for retention of both hydrophilic and hydrophobic organic pesticides were tested for pesticide removal in planted microcosms. The retention of six pesticides frequently detected in surface waters (bentazone, MCPA, metalaxyl, propiconazole, pencycuron, and imidacloprid) was evaluated in unplanted and planted pot experiments with novel bed material mixtures consisting of pumice, vermiculite, water super-absorbent polymer (SAP) for retention of ionic and water soluble pesticides, and synthetic hydrophobic wool for adsorption of hydrophobic pesticides. The novel materials were compared to soil with high organic matter content. The highest retention of the pesticides was observed in the soil, with a considerable translocation of pesticides into the plants, and low leaching potential, in particular for the hydrophobic compounds. However, due to the high retention of pesticides in soil, environmental risks related to their long term mobilization cannot be excluded. Mixtures of pumice and vermiculite with SAP resulted in high retention of i) water and ii) both hydrophilic and hydrophobic pesticides but with much lower leaching potential compared to the mineral systems without SAP. Mixtures of such materials may provide near natural treatment options in riparian strips and also for treatment of rainwater runoff without the need for water containment systems.
Authors
Ian K. Toth Marie-anne Barny May Bente Brurberg Guy Condemine Robert Czajkowski John G. Elphinstone Valérie Helias Steven B. Johnson Lucy N. Moleleki Minna Pirhonen Simeon Rossmann Leah Tsror Jacquie E. van der Waals Jan M. van der Wolf Frédérique Van Gijsegem Iris YedidiaAbstract
The soft rot Pectobacteriaceae (SRP) infect a wide range of plants worldwide and cause economic damage to crops and ornamentals but can also colonize other plants as part of their natural life cycle. They are found in a variety of environmental niches, including water, soil and insects, where they may spread to susceptible plants and cause disease. In this chapter, we look in detail at the plants colonized and infected by these pathogens and at the diseases and symptoms they cause. We also focus on where in the environment these organisms are found and their ability to survive and thrive there. Finally, we present evidence that SRP may assist the colonization of human enteric pathogens on plants, potentially implicating them in aspects of human/animal as well as plant health.
Authors
Stig A. Borgvang Dorinde Mechtilde Meike Kleinegris Viswanath Kiron Katerina Kousoulaki Maria Barbosa Anabela Raymundo Carlos Unamunzaga Anne Kjersti Uhlen Sander Hazewinkel Hans Torstein Kleivdal Trude Wicklund Kai Kristoffer Lie Nils-Arne Ekerhovd Kristian Fuglseth Dag Hjelle Arne Edvard Rosland Hortemo Hans Petter Kleppen Jørund Hagen Helen Haaland Per Fredriksen Shuichi Satoh Rene Wijffels Kari SkjånesAbstract
The knowledge- and technology platform developed within the ALGAE TO FUTURE project aims to lay a foundation for an industrial microalgae production in Norway. In the project ALGAE TO FUTURE, funded by the Norwegian Research Council 2017-2021, with a consortium of 20 national and international research and industry partners, research and product development of microalgae biomass have been approached from multiple angles merging multiple research fields. The focus of the research has been bioprocess developments linked to lipids, carbohydrates and proteins, where species selection and cultivation conditions are used to obtain microalgae biomass with specific nutrient composition targeting specific products. We have chosen to target the development of three example products, namely 1) bread using algae biomass with high protein content, 2) beer using algae biomass with high content of starch and starch-degrading enzymes, and 3) fish feed using algae biomass with high PUFA content. These case studies have been chosen in order to demonstrate the use of algal biomass from various algae species with highly different nutrient composition suitable for different products. We have in this project studied the whole process line from small scale microalgae cultivation technology, upscaling cultivation, processing of algae biomass, shelf life, food/ feed product development, food safety and consumers attitudes. Some highlights from the four-year project period will be presented. Results from these activities may contribute towards the use of microalgae as part of the future Norwegian bioeconomy.
Authors
Natasha Sant'Anna Iwanicki Ana Beatriz Riguetti Zanardo Botelho Ingeborg Klingen Italo Delalibera Júnior Simeon Rossmann Erik LysøeAbstract
The genus Metarhizium is composed of species used in biological control programs of agricultural pests worldwide. This genus includes common fungal pathogen of many insects and mites and endophytes that can increase plant growth. Metarhizium humberi was recently described as a new species. This species is highly virulent against some insect pests and promotes growth in sugarcane, strawberry, and soybean crops. In this study, we sequenced the genome of M. humberi, isolate ESALQ1638, and performed a functional analysis to determine its genomic signatures and highlight the genes and biological processes associated with its lifestyle. The genome annotation predicted 10633 genes in M. humberi, of which 92.0% are assigned putative functions, and ∼17% of the genome was annotated as repetitive sequences. We found that 18.5% of the M. humberi genome is similar to experimentally validated proteins associated with pathogen–host interaction. Compared to the genomes of eight Metarhizium species, the M. humberi ESALQ1638 genome revealed some unique traits that stood out, e.g., more genes functionally annotated as polyketide synthases (PKSs), overrepresended GO-terms associated to transport of ions, organic and amino acid, a higher percentage of repetitive elements, and higher levels of RIP-induced point mutations. The M. humberi genome will serve as a resource for promoting studies on genome structure and evolution that can contribute to research on biological control and plant biostimulation. Thus, the genomic data supported the broad host range of this species within the generalist PARB clade and suggested that M. humberi ESALQ1638 might be particularly good at producing secondary metabolites and might be more efficient in transporting amino acids and organic compounds.
Abstract
No abstract has been registered