Publications
NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.
2022
Abstract
No abstract has been registered
Abstract
No abstract has been registered
Authors
Christoph Schürz Natalja Čerkasova Csilla Farkas Attila Nemes Svajunas Plunge Michael Strauch Brigitta Szabó Mikolaj PiniewskiAbstract
This SWAT+ modelling protocol was designed for guiding model setup development and model calibration in 14 European case study sites participating in the modelling component of the EU funded research and innovation project OPtimal strategies to retAIN and re-use water and nutrients in small agricultural catchments across different soil-climatic regions in Europe (OPTAIN). These 14 case studies are small agricultural catchments (ranging in size from 21 to 254 km2 ) located in three biogeographical regions of Europe and 12 different countries. The main topic of OPTAIN are Natural/Small Water Retention Measures, which are a relatively new concept. These are small and multi-functional measures for the retention/management of water and nutrients in the landscape, thus addressing drought/flood control, management of water quality problems, climate change adaptation, biodiversity restoration, etc.
Authors
Rolf Larsson Antti Belinskij Bjørn Kløve Diana Meilutyte-Lukauskiene Elve Lode Eva Skarbøvik Vytautas AkstinasAbstract
The European Union (EU) Water Framework Directive is of paramount importance for water management. According to the legal text, coordination with other directives like the Floods Directive is imperative and motivated by potential synergy effects. In this paper, the degree to which such coordination is achieved is evaluated for five Nordic and Baltic countries. The evaluation is based on legal documents, management plans, as well as on organizational structure in the five countries. The results show that the coordination between the Water Framework Directive and the Floods Directive (or flood management for Norway's case), have been successful for Estonia and Lithuania, whereas Norway, Finland, and especially Sweden need to improve more.
Abstract
Fecal contamination of water constitutes a serious health risk to humans and environmental ecosystems. This is mainly due to the fact that fecal material carries a variety of enteropathogens, which can enter and circulate in water bodies through fecal pollution. In this respect, the prompt identification of the polluting source(s) is pivotal to guiding appropriate target-specific remediation actions. Notably, microbial source tracking (MST) is widely applied to determine the host origin(s) contributing to fecal water pollution through the identification of zoogenic and/or anthropogenic sources of fecal environmental DNA (eDNA). A wide array of host-associated molecular markers have been developed and exploited for polluting source attribution in various aquatic ecosystems. This review is intended to provide the most up-to-date overview of genetic marker-based MST studies carried out in different water types, such as freshwaters (including surface and groundwaters) and seawaters (from coasts, beaches, lagoons, and estuaries), as well as drinking water systems. Focusing on the latest scientific progress/achievements, this work aims to gain updated knowledge on the applicability and robustness of using MST for water quality surveillance. Moreover, it also provides a future perspective on advancing MST applications for environmental research.
Abstract
Zoogenic faecal contamination of the environment is one of the indices included in the evaluation of ecological threats, health hazards and adverse impacts on various ecosystems. The risks and environmental concerns are associated with the fact that faeces of wild and domesticated animals constitute the largest source of environmental loading of enteropathogens associated with transmission of zoonotic diseases (enteric zoonoses). Although sick animals are more likely to transmit pathogens, healthy ones can also be the carriers and defecate them into the environment. This is of particular importance given the close human-animal interactions and health effects resulting from human and ecological exposures to faecal hazards from companion and farm animals. We have therefore set out to investigate whether healthy equines can carry and defecate human infectious pathogens. For this purpose, we set up a pilot study to examine the faecal DNA of horses using culture-independent molecular diagnostics – fluorescent probe-based quantitative real-time PCR. Our results revealed that among a total of 23 horses, 6 were found to carry Campylobacter jejuni (C. jejuni), and 5 had Salmonella enterica serovar Typhimurium (S. Typhimurium). Moreover, Enterococcus faecalis (E. faecalis) was found in 14 horses, while 19 were positive for Clostridium perfringens (C. perfringens). Furthermore, the frequently reported protozoan parasites in livestock, Cryptosporidium parvum (C. parvum) and Giardia lamblia (G. lamblia), were discovered in 8 and 7 samples, respectively. This pilot study shed new light on the phenomenon of healthy horses carrying C. jejuni and other human-health-related enteropathogens.
Authors
Vindhya Basnayaka Jayanga T. Samarasinghe Miyuru Gunathilake Nitin Muttil Dileepa C. Hettiarachchi Amila Abeynayaka Upaka RathnayakeAbstract
River meandering and anabranching have become major problems in many large rivers that carry significant amounts of sediment worldwide. The morphodynamics of these rivers are complex due to the temporal variation of flows. However, the availability of remote sensing data and geographic information systems (GISs) provides the opportunity to analyze the morphological changes in river systems both quantitatively and qualitatively. The present study investigated the temporal changes in the river morphology of the Deduru Oya (river) in Sri Lanka, which is a meandering river. The study covered a period of 32 years (1989 to 2021), using Landsat satellite data and the QGIS platform. Cloud-free Landsat 5 and Landsat 8 satellite images were extracted and processed to extract the river mask. The centerline of the river was generated using the extracted river mask, with the support of semi-automated digitizing software (WebPlotDigitizer). Freely available QGIS was used to investigate the temporal variation of river migration. The results of the study demonstrated that, over the past three decades, both the bend curvatures and the river migration rates of the meandering bends have generally increased with time. In addition, it was found that a higher number of meandering bends could be observed in the lower (most downstream) and the middle parts of the selected river segment. The current analysis indicates that the Deduru Oya has undergone considerable changes in its curvature and migration rates.
Authors
Miyuru GunathilakeAbstract
No abstract has been registered
Abstract
Satellite Rainfall Products (SRPs) are now in widespread use around the world as a better alternative for scarce observed rain gauge data. Upon proper analysis of the SRPs and observed rainfall data, SRP data can be used in many hydrological applications. This evaluation is very much necessary since, it had been found that their performances vary with different areas of interest. This research looks at the three prominent river basins; Malwathu, Deduru, and Kalu of Sri Lanka and evaluates six selected SRPs, namely, IMERG, TRMM 3B42, TRMM 3B42-RT, PERSIANN, PERSIANN-CCS, PERSIANN-CDR against 15+ years of observed rainfall data with the use of several indices. Four Continuous Evaluation Indices (CEI) such as Root Mean Square Error (RMSE), Percentage Bias (PBIAS), Pearson’s Correlation Coefficient (r), and Nash Sutcliffe Efficiency (NSE) were used to evaluate the accuracy of SRPs and four Categorical Indices (CI) namely, Probability of Detection (POD), Critical Success Index (CSI), False Alarm Ratio (FAR) and Proportion Correct (PC) was used to evaluate the detection and prediction accuracy of the SRPs. Then, the Mann–Kendall Test (MK test) was used to identify trends in the datasets and Theil’s and Sens Slope Estimator to quantify the trends observed. The study of categorical indicators yielded varying findings, with TRMM-3B42 performing well in the dry zone and IMERG doing well in the wet zone and intermediate zone of Sri Lanka. Regarding the CIs in the three basins, overall, IMERG was the most reliable. In general, all three basins had similar POD and PC findings. The SRPs, however, underperformed in the dry zone in terms of CSI and FAR. Similar findings were found in the CEI analysis, as IMERG gave top performance across the board for all four CEIs in the three basins. The three basins’ overall weakest performer was PERSIANN-CCS. The trend analysis revealed that there were very few significant trends in the observed data. Even when significant trends were apparent, the SRP projections seldom captured them. TRMM-3B42 RT had the best trend prediction performance. However, Sen’s slope analysis revealed that while the sense of the trend was properly anticipated, the amplitude of the prediction significantly differed from that of the observed data.
Authors
Jayanga T. Samarasinghe Vindhya Basnayaka Miyuru Gunathilake Hazi M. Azamathulla Upaka RathnayakeAbstract
The application of numerical models to understand the behavioural pattern of a flood is widely found in the literature. However, the selection of an appropriate hydraulic model is highly essential to conduct reliable predictions. Predicting flood discharges and inundation extents are the two most important outcomes of flood simulations to stakeholders. Precise topographical data and channel geometries along a suitable hydraulic model are required to accurately predict floods. One-dimensional (1D) hydraulic models are now replaced by two-dimensional (2D) or combined 1D/2D models for higher performances. The Hydraulic Engineering Centre’s River Analysis System (HEC-RAS) has been widely used in all three forms for predicting flood characteristics. However, comparison studies among the 1D, 2D to 1D/2D models are limited in the literature to identify the better/best approach. Therefore, this research was carried out to identify the better approach using an example case study of the Kelani River basin in Sri Lanka. Two flood events (in 2016 and 2018) were separately simulated and tested for their accuracy using observed inundations and satellite-based inundations. It was found that the combined 1D/2D HEC-RAS hydraulic model outperforms other models for the prediction of flows and inundation for both flood events. Therefore, the combined model can be concluded as the better hydraulic model to predict flood characteristics of the Kelani River basin in Sri Lanka. With more flood studies, the conclusions can be more generalized.