Publications
NIBIOs employees contribute to several hundred scientific articles and research reports every year. You can browse or search in our collection which contains references and links to these publications as well as other research and dissemination activities. The collection is continously updated with new and historical material.
2023
Authors
Simeon Rossmann Erik Lysøe Monica Skogen Håvard Eikemo Marta Janiszewska Mirella Ludwiczewska Sylwester Sobkowiak Jadwiga Śliwka May Bente BrurbergAbstract
No abstract has been registered
Abstract
Phytophthora cactorum has two distinct pathotypes that cause crown rot and leather rot in strawberry (Fragaria × ananassa). Strains of the crown rot pathotype can infect both the rhizome (crown) and fruit tissues, while strains of the leather rot pathotype can only infect the fruits of strawberry. The genome of a highly virulent crown rot strain, a low virulent crown rot strain, and three leather rot strains were sequenced using PacBio high fidelity (HiFi) long read sequencing. The reads were de novo assembled to 66.4–67.6 megabases genomes in 178–204 contigs, with N50 values ranging from 892 to 1,036 kilobases. The total number of predicted complete genes in the five P. cactorum genomes ranged from 17,286 to 17,398. Orthology analysis identified a core secretome of 8,238 genes. Comparative genomic analysis revealed differences in the composition of potential virulence effectors, such as putative RxLR and Crinklers, between the crown rot and the leather rot pathotypes. Insertions, deletions, and amino acid substitutions were detected in genes encoding putative elicitors such as beta elicitin and cellulose-binding domain proteins from the leather rot strains compared to the highly virulent crown rot strain, suggesting a potential mechanism for the crown rot strain to escape host recognition during compatible interaction with strawberry. The results presented here highlight several effectors that may facilitate the tissue-specific colonization of P. cactorum in strawberry.
Abstract
No abstract has been registered
Authors
Hang Su Andre van Eerde Espen Rimstad Ralph Bock Norica Branza-Nichita Igor A. Yakovlev Jihong Liu ClarkeAbstract
Plants provide not only food and feed, but also herbal medicines and various raw materials for industry. Moreover, plants can be green factories producing high value bioproducts such as biopharmaceuticals and vaccines. Advantages of plant-based production platforms include easy scale-up, cost effectiveness, and high safety as plants are not hosts for human and animal pathogens. Plant cells perform many post-translational modifications that are present in humans and animals and can be essential for biological activity of produced recombinant proteins. Stimulated by progress in plant transformation technologies, substantial efforts have been made in both the public and the private sectors to develop plant-based vaccine production platforms. Recent promising examples include plant-made vaccines against COVID-19 and Ebola. The COVIFENZ® COVID-19 vaccine produced in Nicotiana benthamiana has been approved in Canada, and several plant-made influenza vaccines have undergone clinical trials. In this review, we discuss the status of vaccine production in plants and the state of the art in downstream processing according to good manufacturing practice (GMP). We discuss different production approaches, including stable transgenic plants and transient expression technologies, and review selected applications in the area of human and veterinary vaccines. We also highlight specific challenges associated with viral vaccine production for different target organisms, including lower vertebrates (e.g., farmed fish), and discuss future perspectives for the field.
Abstract
No abstract has been registered
Abstract
No abstract has been registered
Authors
Chatchai Kosawang Isabella Børja Maria-Luz Herrero Nina Elisabeth Nagy Lene R. Nielsen Halvor Solheim Volkmar Timmermann Ari HietalaAbstract
Introduction: The ascomycete Hymenoscyphus fraxineus, originating from Asia, is currently threatening common ash (Fraxinus excelsior) in Europe, massive ascospore production from the saprotrophic phase being a key determinant of its invasiveness. Methods: To consider whether fungal diversity and succession in decomposing leaf litter are affected by this invader, we used ITS-1 metabarcoding to profile changes in fungal community composition during overwintering. The subjected ash leaf petioles, collected from a diseased forest and a healthy ash stand hosting the harmless ash endophyte Hymenoscyphus albidus, were incubated in the forest floor of the diseased stand between October 2017 and June 2018 and harvested at 2–3-month intervals. Results: Total fungal DNA level showed a 3-fold increase during overwintering as estimated by FungiQuant qPCR. Petioles from the healthy site showed pronounced changes during overwintering; ascomycetes of the class Dothideomycetes were predominant after leaf shed, but the basidiomycete genus Mycena (class Agaricomycetes) became predominant by April, whereas H. albidus showed low prevalence. Petioles from the diseased site showed little change during overwintering; H. fraxineus was predominant, while Mycena spp. showed increased read proportion by June. Discussion: The low species richness and evenness in petioles from the diseased site in comparison to petioles from the healthy site were obviously related to tremendous infection pressure of H. fraxineus in diseased forests. Changes in leaf litter quality, owing to accumulation of host defense phenolics in the pathogen challenged leaves, and strong saprophytic competence of H. fraxineus are other factors that probably influence fungal succession. For additional comparison, we examined fungal community structure in petioles collected in the healthy stand in August 2013 and showing H. albidus ascomata. This species was similarly predominant in these petioles as H. fraxineus was in petioles from the diseased site, suggesting that both fungi have similar suppressive effects on fungal richness in petiole/rachis segments they have secured for completion of their life cycle. However, the ability of H. fraxineus to secure the entire leaf nerve system in diseased forests, in opposite to H. albidus, impacts the general diversity and successional trajectory of fungi in decomposing ash petioles.
Authors
Bjørn Arild Hatteland Rafael De Andrade Moral Gunnhild Jaastad Gaute Myren Endre Bjotveit Irén Lunde Sekse Karin Westrum Nina TrandemAbstract
BACKGROUND Integrated pest management (IPM) has a long history in fruit production and has become even more important with the implementation of the EU directive 2009/128/EC making IPM mandatory. In this study, we surveyed 30 apple orchards in Norway for 3 years (2016–2018) monitoring pest- and beneficial arthropods as well as evaluating fruit damage. We obtained growers’ diaries of pest management and used these data to study positive and negative correlations of pesticides with the different arthropod groups and damage due to pests. RESULTS IPM level had no significant effects on damage of harvested apples by arthropod pests. Furthermore, damage by arthropods was mainly caused by lepidopteran larvae, tortricids being especially important. The number of insecticide applications varied between 0 and 3 per year (mean 0.8), while acaricide applications varied between 0 and 1 per year (mean 0.06). Applications were often based on forecasts of important pest species such as the apple fruit moth (Argyresthia conjugella). Narrow-spectrum insecticides were commonly used against aphids and lepidopteran larvae, although broad-spectrum neonicotinoid (thiacloprid) insecticides were also applied. Anthocorid bugs and phytoseiid mites were the most abundant natural enemies in the studied orchards. However, we found large differences in abundance of various “beneficials” (e.g., lacewings, anthocorids, parasitic wasps) between eastern and western Norway. A low level of IPM negatively affected the abundance of spiders. CONCLUSION Lepidoptera was found to be the most important pest group in apple orchards. Insecticide use was overall low, but number of spray applications and use of broad-spectrum insecticides varied between growers and regions. IPM level did not predict the level of fruit damage by insects nor the abundance of important pests or most beneficial groups in an apple orchard. © 2023 The Authors. Pest Management Science published by John Wiley & Sons Ltd on behalf of Society of Chemical Industry.
Abstract
No abstract has been registered
Authors
Carl Gunnar Fossdal Igor A. Yakovlev Marcos Viejo Paul Grini Paal Krokene Yupeng Zhang Jorunn Elisabeth OlsenAbstract
No abstract has been registered